I come from the wonderful future of 2009!!!
Whoa, thread revival!!
Naveed — the whole song, basically
Starseed — the "yeah-yeah-yeah-heeee" part at the very beginning that starts up the beat of the song
Neon Crossing — the build-up part when he goes "And I can't wait... I can't be the LIAR LIAR!!... the LIAR, LYYYEE YARRRR.."
The Birdman — "I can't see him but he's stalking my (FUCKING?) thoughts!!!"
Superman's Dead — all the vocalizations that aren't ACTUAL words, haha, which is like half the song... (i.e. "now-a hoo hoo now a hoo-hoo now a-hoo hoo")
4 AM — just the way his voice builds from a slow tempo to a full-blown whine (a GOOD whine

) by the end of the song so perfectly
Carnival — The very end of the song when the xylophone (sp?) instrument thing starts up again, and Raine does random vocalizations.. like "Claaooossed down, do do do"
One Man Army — each time in the chorus when he changes the note perfectly from one octave to another,,, the part where he goes "through the blaze
EYE know
EYE'M coughing..."
Blister — fuckin amazing part when he goes "lonely, I'm wanderrrr-iing, patrolling.... for enaaauh---mees!!".... Raine's voice is so amazing through this whole song
Thief — The way his voice is in perfect unison with the instruments at "this will not go... awaiiiiee"
Annie — "there's SOMEthing in the way she exPLAINS to me, please be careful I exist in SOMEWAN,,, elses head oh no"... and the part "Woah oh oh Woah oh oh".
Stealing Babies — one of my favorite Raine-ism vocalizations: "When you gonna make me understaaahuhhand, WHY!! How should I say "I'm SOOO sorry", how should we pray... to make us feel alaaye ayee ayee ayyee ayyee ayee ayyee ayyyyive".... I try to duplicate this every time I listen... I probably fail miserably.
Middle of Yesterday — the end when he goes on the "Oh, and I'll make it up to you" rant
Everyone's a Junkie — The way he vocalizes "black" in the part "But everything's gone blaaaack"
All My Friends — The second time he goes "Again, this time, we won't understand again, I'm not waiting for....", when the instruments pick up
The Wonderful Future — the whole EFFING song

, lol
Somewhere Out There —This song basically defines the change in his vocal style... I like the way his voice sounds in this song
Not Afraid (live) — I like the way he's yelling the words in this live version, as opposed to the stupefied studio version
Angels Losing Sleep — Amazing chorus, love the part "I'll wait, I'll wait I'll wait I'll wait"